This is a short post giving steps on how to actually install R packages. Setting the repository. Every time you install a R package, you are asked which. Installation ----- - Install the bioconductor package 'affy' # within R source('http:// biocLite('affy') - Install the 'pvac' and 'pvacExampleData' source packages # on command line R CMD INSTALL.
Bioconductor - Package Vignettes. Each Bioconductor package contains at least one vignette, a document.
- You will only see packages you install there if that is in your R library path.
- Status: Stable; Install: start R, then type install.packages('GenABEL') Quick start: start R, then type library(GenABEL); demo(ge03d2).
- Lab 2 - Analysis of Affymetrix Microarray Data James Wettenhall. Created June 25, 2004. Contents: Software required for this lab. Required R packages; Recommended R packages; Required data files; Estrogen.
R Affy Library Installation
Vignettes contain executable examples and are intended. You can access the PDF version of a vignette for any installed package.
Working with Affymetrix CEL files. Download the most recent version. Normalizing Affy microarray data.
R using the browse. Vignettes function. You can discover the. The result will be a . R. file for each vignette source file written to your current working.
You can use these R files to cut and paste into an R. However, you may not include.
When. using all or parts of the Bioconductor course materials (slides. Bioconductor website.